PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00019379001
Common NameGSBRNA2T00019379001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GATA
Protein Properties Length: 259aa    MW: 29276.8 Da    PI: 7.534
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00019379001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA64.41.3e-20180214135
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                          C++C ttkTp+WR+gp+g+ktLCnaCG+++r+ +l
  GSBRNA2T00019379001 180 CTHCETTKTPQWREGPNGPKTLCNACGVRFRSGRL 214
                          *******************************9885 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577168.55E-16173236No hitNo description
SMARTSM004013.0E-20174224IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.6E-15178211IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011412.084178210IPR000679Zinc finger, GATA-type
CDDcd002021.83E-17179228No hitNo description
PfamPF003202.1E-18180214IPR000679Zinc finger, GATA-type
PROSITE patternPS003440180205IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MNWLPEEEFN DSFFDDLINQ INFPLEDTTT NGEGEDWESK FQHLEPPPMD LFTTFPCEFT  60
SSHVINKEVA PVPVLKQSSS PSPPDVKVSK LFQSSSPVSV LESSDASFSP QNLISQCLAF  120
PVKGMRSKRK RPTAQRLRFL YPFEASKPEA YYSSEQHAKK KRKTSHTEAS SYDDGIVRRC  180
THCETTKTPQ WREGPNGPKT LCNACGVRFR SGRLVPEYRP ASSPTFIPSL HSNSHRKIIE  240
MRRKEGDEFD NSMIHSGA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00019379001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013697513.10.0PREDICTED: GATA transcription factor 11-like
SwissprotQ6DBP81e-114GAT11_ARATH; GATA transcription factor 11
TrEMBLA0A078GBF60.0A0A078GBF6_BRANA; BnaC08g43400D protein
STRINGBra031608.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16812589
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08010.21e-104GATA transcription factor 11
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]